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Example Dataset: HFHS data

HFHSdata.Rd

The example data is a list containing 8 elements:

  1. OTU data for HFHS diet: an array with dimensions n=23, p=212, t=4.

  2. OTU data for Normal diet: an array with dimensions n=23, p=212, t=4.

  3. Library size for HFHS diet: a matrix with dimensions n=23, t=4.

  4. Library size for Normal diet: a matrix with dimensions n=23, t=4.

  5. Filtered sample information: a data frame with dimensions.

  6. Filtered taxonomy data: a data frame with dimension.

  7. Low abundant taxa for HFHS diet: a list of 4 elements.

  8. Low abundant taxa for Normal diet: a list of 4 elements.

Usage

HFHSdata

Format

A list containing 8 elements, including arrays, matrices, data frames, and lists, as described above.

References

Kodikara, S., & Le Cao, K. A. (2024). Microbial network inference for longitudinal microbiome studies with LUPINE. bioRxiv, 2024-05.

Examples

data(HFHSdata)